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LOC108473643 ubiquitin-conjugating enzyme E2 variant 1C [ Gossypium arboreum ]

Gene ID: 108473643, updated on 23-Nov-2023

Summary

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Gene symbol
LOC108473643
Gene description
ubiquitin-conjugating enzyme E2 variant 1C
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium arboreum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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Location:
chromosome: 11
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2022_12 current ASM2569848v2 (GCF_025698485.1) 11 NC_069080.1 (137138105..137140270, complement)
100 previous assembly Gossypium_arboreum_v1.0 (GCF_000612285.1) 4 NC_030667.1 (130265766..130267921)

Chromosome 11 - NC_069080.1Genomic Context describing neighboring genes Neighboring gene transcription repressor OFP13-like Neighboring gene probable CCR4-associated factor 1 homolog 11 Neighboring gene ubiquitin-conjugating enzyme E2 variant 1C-like Neighboring gene ubiquitin-conjugating enzyme E2 variant 1C-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Metabolomic and transcriptomic insights into how cotton fiber transitions to secondary wall synthesis, represses lignification, and prolongs elongation. Tuttle JR, et al. BMC Genomics, 2015 Jun 27. PMID 26116072, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in postreplication repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K63-linked ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin-conjugating enzyme E2 variant 1C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_025698485.1-RS_

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569848v2 Primary Assembly

Genomic

  1. NC_069080.1 Reference ASM2569848v2 Primary Assembly

    Range
    137138105..137140270 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017775321.2 → XP_017630810.1  ubiquitin-conjugating enzyme E2 variant 1C

    UniProtKB/TrEMBL
    A0A0B0NWK4
    Conserved Domains (1) summary
    cl00154
    Location:13 → 143
    UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...
Nucleotide Protein
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