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sec16b SEC16 homolog B, endoplasmic reticulum export factor [ Pygocentrus nattereri (red-bellied piranha) ]

Gene ID: 108437689, updated on 18-Jun-2024

Summary

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Gene symbol
sec16b
Gene description
SEC16 homolog B, endoplasmic reticulum export factor
See related
Ensembl:ENSPNAG00000008668
Gene type
protein coding
RefSeq status
MODEL
Organism
Pygocentrus nattereri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Pygocentrus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 30
Exon count:
26
Annotation release Status Assembly Chr Location
101 current fPygNat1.pri (GCF_015220715.1) 30 NC_051240.1 (16158203..16203084)
100 previous assembly Pygocentrus_nattereri-1.0.2 (GCF_001682695.1) Unplaced Scaffold NW_016243996.1 (986247..1027864, complement)

Chromosome 30 - NC_051240.1Genomic Context describing neighboring genes Neighboring gene guanine nucleotide binding protein (G protein), gamma 12b Neighboring gene growth arrest and DNA-damage-inducible, alpha, b Neighboring gene zinc finger protein 648 Neighboring gene glutamine synthetase-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in COPII vesicle coating IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to endoplasmic reticulum exit site IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in ER to Golgi transport vesicle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum exit site IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein transport protein Sec16B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pygocentrus nattereri Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPygNat1.pri

Genomic

  1. NC_051240.1 Reference fPygNat1.pri

    Range
    16158203..16203084
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017714956.2 → XP_017570445.2  protein transport protein Sec16B isoform X1

    UniProtKB/TrEMBL
    A0A3B4BR92
    Conserved Domains (2) summary
    cd09233
    Location:306 → 666
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
    PRK14086
    Location:11 → 148
    dnaA; chromosomal replication initiator protein DnaA

  2. XM_017714955.2 → XP_017570444.2  protein transport protein Sec16B isoform X1

    UniProtKB/TrEMBL
    A0A3B4BR92
    Conserved Domains (2) summary
    cd09233
    Location:306 → 666
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
    PRK14086
    Location:11 → 148
    dnaA; chromosomal replication initiator protein DnaA

  3. XM_017714957.2 → XP_017570446.2  protein transport protein Sec16B isoform X2

    UniProtKB/TrEMBL
    A0A3B4BR92
    Related
    ENSPNAP00000002232.2, ENSPNAT00000010791.2
    Conserved Domains (2) summary
    cd09233
    Location:303 → 663
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
    PRK14086
    Location:11 → 145
    dnaA; chromosomal replication initiator protein DnaA
Nucleotide Protein
Heading Accession and Version

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