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Mindy4b MINDY family member 4B [ Rattus norvegicus (Norway rat) ]

Gene ID: 108350017, updated on 18-Sep-2024

Summary

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Symbol
Mindy4bprovided by RGD
Full Name
MINDY family member 4Bprovided by RGD
Primary source
RGD:11362385
See related
EnsemblRapid:ENSRNOG00000043502 AllianceGenome:RGD:11362385
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Fam188b2; AABR07010717.1
Summary
Orthologous to human MINDY4B (MINDY family member 4B). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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Location:
2q26
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (145175510..145208165, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (143026685..143061966, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (149004738..149025388, complement)

Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene glutamate-rich 6 Neighboring gene uncharacterized LOC134485621 Neighboring gene siah E3 ubiquitin protein ligase 2 Neighboring gene clarin 1 Neighboring gene ribosomal protein L7a, pseudogene 21

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in protein K48-linked deubiquitination IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
MINDY family member 4B; inactive ubiquitin carboxyl-terminal hydrolase MINDY-4B
Names
family with sequence similarity 188 member B2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001433333.1 → NP_001420262.1  MINDY family member 4B

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000002

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086020.1 Reference GRCr8

    Range
    145175510..145208165 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063282895.1 → XP_063138965.1  inactive ubiquitin carboxyl-terminal hydrolase MINDY-4B isoform X1

    UniProtKB/TrEMBL
    D3ZZD5
    Related
    ENSRNOP00000063566.2, ENSRNOT00000066726.4

  2. XM_063282896.1 → XP_063138966.1  inactive ubiquitin carboxyl-terminal hydrolase MINDY-4B isoform X2

    UniProtKB/TrEMBL
    D3ZZD5
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases