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tut4 terminal uridylyl transferase 4 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108276004, updated on 14-Mar-2024

Summary

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Gene symbol
tut4
Gene description
terminal uridylyl transferase 4
See related
Ensembl:ENSIPUG00000002638
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Also known as
zcchc11
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 15
Exon count:
32
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 15 NC_030430.2 (8138696..8155933, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 15 NC_030430.1 (7620620..7636652, complement)

Chromosome 15 - NC_030430.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108276006 Neighboring gene cytochrome P450 2B4 Neighboring gene glutathione peroxidase 7 Neighboring gene protein shisa-like-2A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA uridylyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA 3' uridylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
terminal uridylyltransferase 4
Names
zinc finger CCHC-type containing 11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030430.2 Reference Coco_2.0 Primary Assembly

    Range
    8138696..8155933 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017487243.3 → XP_017342732.1  terminal uridylyltransferase 4 isoform X1

    UniProtKB/TrEMBL
    A0A2D0SJ62

  2. XM_017487248.3 → XP_017342737.1  terminal uridylyltransferase 4 isoform X6

    UniProtKB/TrEMBL
    A0A2D0SJ67

  3. XM_017487244.3 → XP_017342733.1  terminal uridylyltransferase 4 isoform X2

    UniProtKB/TrEMBL
    A0A2D0SJ53

  4. XM_017487246.3 → XP_017342735.1  terminal uridylyltransferase 4 isoform X4

    UniProtKB/TrEMBL
    A0A2D0SKB3

  5. XM_017487247.3 → XP_017342736.1  terminal uridylyltransferase 4 isoform X5

    UniProtKB/TrEMBL
    A0A2D0SJR9
    Related
    ENSIPUP00000003732.1

  6. XM_017487245.3 → XP_017342734.1  terminal uridylyltransferase 4 isoform X3

    UniProtKB/TrEMBL
    A0A2D0SJ55

  7. XM_017487242.3 → XP_017342731.1  terminal uridylyltransferase 4 isoform X1

    UniProtKB/TrEMBL
    A0A2D0SJ62
Nucleotide Protein
Heading Accession and Version

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