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lrrc4cb leucine rich repeat containing 4C, genome duplicate b [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108259330, updated on 14-Mar-2024

Summary

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Gene symbol
lrrc4cb
Gene description
leucine rich repeat containing 4C, genome duplicate b
See related
Ensembl:ENSIPUG00000022604
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Also known as
Lrrc4c
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 27
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 27 NC_030442.2 (9147180..9177183, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 27 NC_030442.1 (9971644..9999379)

Chromosome 27 - NC_030442.2Genomic Context describing neighboring genes Neighboring gene tetratricopeptide repeat domain 17 Neighboring gene hydroxysteroid (17-beta) dehydrogenase 12b Neighboring gene APAF1 interacting protein Neighboring gene CD44 molecule (IN blood group) a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in modulation of chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of axonogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic membrane adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in glutamatergic synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic density membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat-containing protein 4C
Names
Leucine-rich repeat-containing protein 4C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030442.2 Reference Coco_2.0 Primary Assembly

    Range
    9147180..9177183 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017458724.3 → XP_017314213.1  leucine-rich repeat-containing protein 4C

    UniProtKB/TrEMBL
    W5UDF3
    Related
    ENSIPUP00000033613.1
Nucleotide Protein
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Gene LinkOut

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