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LOC108259264 R3H domain-containing protein 1 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108259264, updated on 3-Apr-2024

Summary

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Gene symbol
LOC108259264
Gene description
R3H domain-containing protein 1
See related
Ensembl:ENSIPUG00000013629
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Also known as
R3hdm2
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 27
Exon count:
28
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 27 NC_030442.2 (1580487..1616990)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 27 NC_030442.1 (16973831..17009578, complement)

Chromosome 27 - NC_030442.2Genomic Context describing neighboring genes Neighboring gene transmembrane protein 163b Neighboring gene cyclin T2b Neighboring gene zinc finger, RAN-binding domain containing 3 Neighboring gene Rho family GTPase 3a Neighboring gene uncharacterized LOC128629243

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
R3H domain-containing protein 1; R3H domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030442.2 Reference Coco_2.0 Primary Assembly

    Range
    1580487..1616990
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047151667.2 → XP_047007623.1  R3H domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A979ENP3

  2. XM_047151669.2 → XP_047007625.1  R3H domain-containing protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A979EIB5

  3. XM_047151670.2 → XP_047007626.1  R3H domain-containing protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A979EQQ0

  4. XM_047151671.2 → XP_047007627.1  R3H domain-containing protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A979E4B7

  5. XM_017458566.3 → XP_017314055.1  R3H domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A2D0Q8L0, W5UL42

  6. XM_047151672.2 → XP_047007628.1  R3H domain-containing protein 1 isoform X6

    UniProtKB/TrEMBL
    A0A979E2E8

  7. XM_047151673.2 → XP_047007629.1  R3H domain-containing protein 1 isoform X7

    UniProtKB/TrEMBL
    A0A979EIR7

  8. XM_047151674.2 → XP_047007630.1  R3H domain-containing protein 2 isoform X8

    UniProtKB/TrEMBL
    A0A979EN26

  9. XM_047151675.2 → XP_047007631.1  R3H domain-containing protein 1 isoform X9

    UniProtKB/TrEMBL
    A0A979EMR6

  10. XM_047151668.2 → XP_047007624.1  R3H domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A979ENP3
Nucleotide Protein
Heading Accession and Version

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