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dhx57 DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 [ Kryptolebias marmoratus (mangrove rivulus) ]

Gene ID: 108241011, updated on 10-Apr-2024

Summary

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Gene symbol
dhx57
Gene description
DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57
See related
EnsemblRapid:ENSKMAG00010019394
Gene type
protein coding
RefSeq status
MODEL
Organism
Kryptolebias marmoratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Kryptolebias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG18
Exon count:
25
Annotation release Status Assembly LG Location
102 current ASM164957v2 (GCF_001649575.2) LG18 NC_051447.1 (15846256..15857699, complement)
101 previous assembly ASM164957v1 (GCF_001649575.1) Unplaced Scaffold NW_016094320.1 (1294021..1305455, complement)

Linkage Group LG18 - NC_051447.1Genomic Context describing neighboring genes Neighboring gene small lysine-rich protein 1 Neighboring gene short transmembrane mitochondrial protein 1 Neighboring gene MORN repeat containing 2 Neighboring gene striatin interacting protein 2 Neighboring gene adenosylhomocysteinase like 2b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular anatomical structure IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative ATP-dependent RNA helicase DHX57
Names
DEAH-box helicase 57
DExH-box helicase 57

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Kryptolebias marmoratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM164957v2 Primary Assembly

Genomic

  1. NC_051447.1 Reference ASM164957v2 Primary Assembly

    Range
    15846256..15857699 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017424894.3 → XP_017280383.1  putative ATP-dependent RNA helicase DHX57

    UniProtKB/TrEMBL
    A0A3Q3BH54, A0A3Q3BHX5
    Related
    ENSKMAP00010041983.1, ENSKMAT00010044366.1
    Conserved Domains (4) summary
    COG1643
    Location:546 → 1412
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
    cd14317
    Location:202 → 239
    UBA_DHX57; UBA domain found in putative ATP-dependent RNA helicase DHX57 and similar proteins
    pfam00642
    Location:325 → 345
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    pfam05773
    Location:268 → 442
    RWD; RWD domain
Nucleotide Protein
Heading Accession and Version

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