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gphnb gephyrin b [ Kryptolebias marmoratus (mangrove rivulus) ]

Gene ID: 108233472, updated on 10-Apr-2024

Summary

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Gene symbol
gphnb
Gene description
gephyrin b
See related
EnsemblRapid:ENSKMAG00010022244
Gene type
protein coding
RefSeq status
MODEL
Organism
Kryptolebias marmoratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Kryptolebias
Also known as
gphn
Orthologs
zebrafish all
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Genomic context

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See gphnb in Genome Data Viewer
Location:
chromosome: LG19
Exon count:
26
Annotation release Status Assembly LG Location
102 current ASM164957v2 (GCF_001649575.2) LG19 NC_051448.1 (6691785..6852885)
101 previous assembly ASM164957v1 (GCF_001649575.1) Unplaced Scaffold NW_016094260.1 (1927865..2088922, complement)

Linkage Group LG19 - NC_051448.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 24 member 4b Neighboring gene transmembrane protein 121Ab Neighboring gene fucosyltransferase 8b (alpha (1,6) fucosyltransferase) Neighboring gene protein associated with LIN7 1, MAGUK p55 family member b Neighboring gene ATPase H+ transporting V1 subunit D

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables molybdopterin molybdotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Mo-molybdopterin cofactor biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in establishment of synaptic specificity at neuromuscular junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in gamma-aminobutyric acid receptor clustering IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycine receptor clustering IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in molybdenum incorporation into molybdenum-molybdopterin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in postsynaptic neurotransmitter receptor diffusion trapping IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in dendrite IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic specialization IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gephyrin b
Names
gephyrin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Kryptolebias marmoratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM164957v2 Primary Assembly

Genomic

  1. NC_051448.1 Reference ASM164957v2 Primary Assembly

    Range
    6691785..6852885
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025005027.2 → XP_024860795.1  gephyrin b isoform X8

    UniProtKB/TrEMBL
    A0A3Q3BA03
    Conserved Domains (2) summary
    cd00886
    Location:11 → 158
    MogA_MoaB; MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, ...
    cd00887
    Location:374 → 781
    MoeA; MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and ...

  2. XM_025005028.2 → XP_024860796.1  gephyrin b isoform X8

    UniProtKB/TrEMBL
    A0A3Q3BA03
    Related
    ENSKMAP00010048011.1, ENSKMAT00010051047.1
    Conserved Domains (2) summary
    cd00886
    Location:11 → 158
    MogA_MoaB; MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, ...
    cd00887
    Location:374 → 781
    MoeA; MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and ...

  3. XM_017411976.3 → XP_017267465.1  gephyrin b isoform X1

    UniProtKB/TrEMBL
    A0A3Q3BA03

  4. XM_017411979.3 → XP_017267468.1  gephyrin b isoform X3

    UniProtKB/TrEMBL
    A0A3Q3BA03
    Related
    ENSKMAP00010047991.1, ENSKMAT00010051027.1

  5. XM_017411980.3 → XP_017267469.1  gephyrin b isoform X4

    UniProtKB/TrEMBL
    A0A3Q3BLB9
    Related
    ENSKMAP00010047969.1, ENSKMAT00010051005.1

  6. XM_025005024.2 → XP_024860792.1  gephyrin b isoform X5

    UniProtKB/TrEMBL
    A0A3Q3BLB9
    Conserved Domains (2) summary
    cd00886
    Location:77 → 231
    MogA_MoaB; MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, ...
    cd00887
    Location:414 → 821
    MoeA; MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and ...

  7. XM_017411977.3 → XP_017267466.1  gephyrin b isoform X2

    UniProtKB/TrEMBL
    A0A3Q3B8B5, A0A3Q3BA03
    Related
    ENSKMAP00010047982.1, ENSKMAT00010051018.1

  8. XM_025005025.2 → XP_024860793.1  gephyrin b isoform X6

    UniProtKB/TrEMBL
    A0A3Q3B9A6
    Related
    ENSKMAP00010047974.1, ENSKMAT00010051010.1
    Conserved Domains (2) summary
    cd00886
    Location:77 → 231
    MogA_MoaB; MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, ...
    cd00887
    Location:389 → 796
    MoeA; MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and ...

  9. XM_025005026.2 → XP_024860794.1  gephyrin b isoform X7

    UniProtKB/TrEMBL
    A0A3Q3B9A6, A0A3Q3BAC2
    Related
    ENSKMAP00010048003.1, ENSKMAT00010051039.1
    Conserved Domains (2) summary
    cd00886
    Location:77 → 231
    MogA_MoaB; MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, ...
    cd00887
    Location:389 → 795
    MoeA; MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and ...
Nucleotide Protein
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