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LOC108209869 caffeoylshikimate esterase [ Daucus carota subsp. sativus ]

Gene ID: 108209869, updated on 18-Jul-2024

Summary

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Gene symbol
LOC108209869
Gene description
caffeoylshikimate esterase
Locus tag
DCAR_005792
Gene type
protein coding
RefSeq status
MODEL
Organism
Daucus carota subsp. sativus (sub-species: sativus)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus; Daucus sect. Daucus
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Genomic context

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See LOC108209869 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_03 current DH1 v3.0 (GCF_001625215.2) 2 NC_030382.2 (34132843..34136584)
100 previous assembly ASM162521v1 (GCF_001625215.1) 2 NC_030382.1 (18329396..18335408)

Chromosome 2 - NC_030382.2Genomic Context describing neighboring genes Neighboring gene magnesium/proton exchanger Neighboring gene large ribosomal subunit protein eL22z Neighboring gene uncharacterized LOC108206593 Neighboring gene uncharacterized LOC108206214

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lipase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
caffeoylshikimate esterase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001625215.2-RS_2024_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DH1 v3.0 Primary Assembly

Genomic

  1. NC_030382.2 Reference DH1 v3.0 Primary Assembly

    Range
    34132843..34136584
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017381046.2 → XP_017236535.1  caffeoylshikimate esterase isoform X1

    UniProtKB/TrEMBL
    A0AAF1ALP6

  2. XM_017381048.2 → XP_017236537.1  caffeoylshikimate esterase isoform X2

  3. XM_017381049.2 → XP_017236538.1  caffeoylshikimate esterase isoform X3

  4. XM_017381050.2 → XP_017236539.1  caffeoylshikimate esterase isoform X3

Nucleotide Protein
Heading Accession and Version

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