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LINC02055 long intergenic non-protein coding RNA 2055 [ Homo sapiens (human) ]

Gene ID: 107986980, updated on 10-Oct-2023

Summary

Official Symbol
LINC02055provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2055provided by HGNC
Primary source
HGNC:HGNC:52895
See related
Ensembl:ENSG00000254101 AllianceGenome:HGNC:52895
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC02055 in Genome Data Viewer
Location:
8q24.23
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (136530798..136897601)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (137646895..138013382)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (137543041..137909844)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375775 Neighboring gene Sharpr-MPRA regulatory region 1033 Neighboring gene NANOG hESC enhancer GRCh37_chr8:137348736-137349237 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19570 Neighboring gene uncharacterized LOC124900255 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28024 Neighboring gene meiotic recombination hotspot E Neighboring gene NANOG hESC enhancer GRCh37_chr8:137750707-137751235 Neighboring gene uncharacterized LOC124902073 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr8:138052445-138053644 Neighboring gene uncharacterized LOC107986905 Neighboring gene RNA, U6 small nuclear 144, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_147196.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC021621, BQ226050
    Related
    ENST00000524346.6

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    136530798..136897601
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    137646895..138013382
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)