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LINC02848 long intergenic non-protein coding RNA 2848 [ Homo sapiens (human) ]

Gene ID: 107986806, updated on 22-Oct-2024

Summary

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Official Symbol
LINC02848provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2848provided by HGNC
Primary source
HGNC:HGNC:54384
See related
Ensembl:ENSG00000226581 AllianceGenome:HGNC:54384
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 1.4), thyroid (RPKM 0.2) and 7 other tissues See more
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Genomic context

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See LINC02848 in Genome Data Viewer
Location:
7q11.21
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (63899898..63925202)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (65107779..65133074)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (63360276..63385580)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901654 Neighboring gene GABPA pseudogene Neighboring gene NMD3 ribosome export adaptor pseudogene 1 Neighboring gene uncharacterized LOC124901653 Neighboring gene uncharacterized LOC105375318 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26054 Neighboring gene solute carrier family 25 member 1 pseudogene 3 Neighboring gene vomeronasal 1 receptor 34 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_186797.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092634
    Related
    ENST00000753474.1

  2. NR_186798.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092634

  3. NR_186799.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092634
    Related
    ENST00000450544.2

  4. NR_186800.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092634
    Related
    ENST00000660806.1

  5. NR_186801.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092634
    Related
    ENST00000702549.2

  6. NR_186802.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092634
    Related
    ENST00000753485.1

  7. NR_186803.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092634
    Related
    ENST00000753466.1

  8. NR_186804.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092634

  9. NR_186805.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092634
    Related
    ENST00000753479.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    63899898..63925202
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    65107779..65133074
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases