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LOC107985038 uncharacterized LOC107985038 [ Homo sapiens (human) ]

Gene ID: 107985038, updated on 10-Oct-2023

Summary

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Gene symbol
LOC107985038
Gene description
uncharacterized LOC107985038
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107985038 in Genome Data Viewer
Location:
17q12
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (33935442..33987365, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (34881693..34933807, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene acid sensing ion channel subunit 2 Neighboring gene uncharacterized LOC124903984 Neighboring gene MPRA-validated peak2804 silencer Neighboring gene VISTA enhancer hs1725 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr17:32215069-32216268 Neighboring gene OCT4 hESC enhancer GRCh37_chr17:32223186-32223687 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr17:32256031-32256532 Neighboring gene uncharacterized LOC124903983 Neighboring gene Sharpr-MPRA regulatory region 12358 Neighboring gene Sharpr-MPRA regulatory region 12081 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12041 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12042 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12044 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12043 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:32304482-32304982 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:32304983-32305483 Neighboring gene uncharacterized LOC107987247 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr17:32357430-32357930 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr17:32357931-32358431 Neighboring gene MPRA-validated peak2807 silencer Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr17:32370125-32371324 Neighboring gene uncharacterized LOC107985035 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12045 Neighboring gene tousled like kinase 2 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    33935442..33987365 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001752840.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    34881693..34933807 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007087390.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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