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LOC107930754 pectate lyase [ Gossypium hirsutum (cotton) ]

Gene ID: 107930754, updated on 12-Aug-2024

Summary

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Gene symbol
LOC107930754
Gene description
pectate lyase
Locus tag
ERO13_A13G071400v2
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium hirsutum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC107930754 in Genome Data Viewer
Location:
chromosome: A13
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current Gossypium_hirsutum_v2.1 (GCF_007990345.1) A13 NC_053436.1 (17226529..17228367)

Chromosome A13 - NC_053436.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA R71 Neighboring gene small nucleolar RNA R71 Neighboring gene small nucleolar RNA R71 Neighboring gene small nucleolar RNA R71

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053436.1 Chromosome A13 Reference Gossypium_hirsutum_v2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectate lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pectate lyase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_007990345.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Gossypium_hirsutum_v2.1 Primary Assembly

Genomic

  1. NC_053436.1 Reference Gossypium_hirsutum_v2.1 Primary Assembly

    Range
    17226529..17228367
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016862473.2 → XP_016717962.1  pectate lyase

    UniProtKB/TrEMBL
    A0A1U8LTW1
    Conserved Domains (2) summary
    smart00656
    Location:168 → 362
    Amb_all; Amb_all domain
    pfam04431
    Location:29 → 82
    Pec_lyase_N; Pectate lyase, N-terminus
Nucleotide Protein
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