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LOC107896839 KH domain-containing protein At2g38610 [ Gossypium hirsutum (cotton) ]

Gene ID: 107896839, updated on 7-Dec-2023

Summary

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Gene symbol
LOC107896839
Gene description
KH domain-containing protein At2g38610
Locus tag
ERO13_A10G152300v2
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium hirsutum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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Location:
chromosome: A10
Exon count:
7
Annotation release Status Assembly Chr Location
101 current Gossypium_hirsutum_v2.1 (GCF_007990345.1) A10 NC_053433.1 (88383409..88388591)
100 previous assembly ASM98774v1 (GCF_000987745.1) 16 NC_030089.1 (24793515..24798155)

Chromosome A10 - NC_053433.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121208354 Neighboring gene small nucleolar RNA R71 Neighboring gene putative zinc transporter At3g08650 Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At5g37450

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
KH domain-containing protein At2g38610

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium hirsutum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Gossypium_hirsutum_v2.1 Primary Assembly

Genomic

  1. NC_053433.1 Reference Gossypium_hirsutum_v2.1 Primary Assembly

    Range
    88383409..88388591
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016822129.2 → XP_016677618.1  KH domain-containing protein At2g38610

    UniProtKB/TrEMBL
    A0A1U8IMJ1
    Conserved Domains (2) summary
    pfam16544
    Location:22 → 72
    STAR_dimer; Homodimerization region of STAR domain protein
    cd22467
    Location:132 → 232
    KH-I_SPIN1_like; type I K homology (KH) RNA-binding domain found in Oryza sativa SPL11-interacting protein 1 (SPIN1) and similar proteins
Nucleotide Protein
Heading Accession and Version

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