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LOC107893239 DNA repair protein XRCC4 [ Gossypium hirsutum (cotton) ]

Gene ID: 107893239, updated on 7-Dec-2023

Summary

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Gene symbol
LOC107893239
Gene description
DNA repair protein XRCC4
Locus tag
ERO13_D10G153800v2
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium hirsutum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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Location:
chromosome: D10
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Gossypium_hirsutum_v2.1 (GCF_007990345.1) D10 NC_053446.1 (41787427..41790051)
100 previous assembly ASM98774v1 (GCF_000987745.1) 2 NC_030075.1 (50083126..50085836, complement)

Chromosome D10 - NC_053446.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107893258 Neighboring gene uncharacterized LOC107893248 Neighboring gene TNF receptor-associated factor homolog 1b Neighboring gene uncharacterized LOC107893210

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA ligation involved in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in double-strand break repair via nonhomologous end joining IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to X-ray IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of DNA ligase IV complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of DNA-dependent protein kinase-DNA ligase 4 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA repair protein XRCC4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium hirsutum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Gossypium_hirsutum_v2.1 Primary Assembly

Genomic

  1. NC_053446.1 Reference Gossypium_hirsutum_v2.1 Primary Assembly

    Range
    41787427..41790051
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041103222.1 → XP_040959156.1  DNA repair protein XRCC4 isoform X1

    UniProtKB/TrEMBL
    A0A1U8IBK5
    Conserved Domains (1) summary
    pfam06632
    Location:19 → 223
    XRCC4; DNA double-strand break repair and V(D)J recombination protein XRCC4

  2. XM_041103223.1 → XP_040959157.1  DNA repair protein XRCC4 isoform X2

    UniProtKB/TrEMBL
    A0A1U8IBK5
    Conserved Domains (1) summary
    pfam06632
    Location:19 → 222
    XRCC4; DNA double-strand break repair and V(D)J recombination protein XRCC4
Nucleotide Protein
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