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LOC107569123 calpain-1 catalytic subunit-like [ Sinocyclocheilus grahami ]

Gene ID: 107569123, updated on 9-Nov-2023

Summary

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Gene symbol
LOC107569123
Gene description
calpain-1 catalytic subunit-like
See related
Ensembl:ENSSGRG00000014055
Gene type
protein coding
RefSeq status
MODEL
Organism
Sinocyclocheilus grahami
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Sinocyclocheilus
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Genomic context

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Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
100 current SAMN03320097.WGS_v1.1 (GCF_001515645.1) Unplaced Scaffold NW_015506493.1 (221199..234790, complement)

NW_015506493.1Genomic Context describing neighboring genes Neighboring gene SDE2 telomere maintenance homolog (S. pombe) Neighboring gene mitochondrial ribosomal protein S28 Neighboring gene uncharacterized LOC107569127 Neighboring gene calpain-2 catalytic subunit-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015506493.1 Unplaced Scaffold Reference SAMN03320097.WGS_v1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-1 catalytic subunit-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sinocyclocheilus grahami Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SAMN03320097.WGS_v1.1 Primary Assembly

Genomic

  1. NW_015506493.1 Reference SAMN03320097.WGS_v1.1 Primary Assembly

    Range
    221199..234790 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016255122.1 → XP_016110608.1  calpain-1 catalytic subunit-like

    UniProtKB/TrEMBL
    A0A672LMM9
    Related
    ENSSGRP00000024984.1, ENSSGRT00000026950.1
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases