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LOC107566570 microtubule-associated proteins 1A/1B light chain 3A [ Sinocyclocheilus grahami ]

Gene ID: 107566570, updated on 9-Nov-2023

Summary

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Gene symbol
LOC107566570
Gene description
microtubule-associated proteins 1A/1B light chain 3A
See related
Ensembl:ENSSGRG00000053476
Gene type
protein coding
RefSeq status
MODEL
Organism
Sinocyclocheilus grahami
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Sinocyclocheilus
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Genomic context

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Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current SAMN03320097.WGS_v1.1 (GCF_001515645.1) Unplaced Scaffold NW_015505182.1 (2165413..2171319)

NW_015505182.1Genomic Context describing neighboring genes Neighboring gene CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 2-like Neighboring gene dynein light chain roadblock-type 1-like Neighboring gene EF-hand and coiled-coil domain-containing protein 1-like Neighboring gene uncharacterized protein FLJ43738-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015505182.1 Unplaced Scaffold Reference SAMN03320097.WGS_v1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagy of mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to nitrogen starvation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in macroautophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in autophagosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in autophagosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
microtubule-associated proteins 1A/1B light chain 3A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sinocyclocheilus grahami Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SAMN03320097.WGS_v1.1 Primary Assembly

Genomic

  1. NW_015505182.1 Reference SAMN03320097.WGS_v1.1 Primary Assembly

    Range
    2165413..2171319
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016252088.1 → XP_016107574.1  microtubule-associated proteins 1A/1B light chain 3A

    UniProtKB/TrEMBL
    A0A672KSI1, A0A672T1J9
    Related
    ENSSGRP00000108517.1, ENSSGRT00000115293.1
    Conserved Domains (1) summary
    cd17234
    Location:4 → 120
    Ubl_ATG8_MAP1LC3A; ubiquitin-like (Ubl) domain found in microtubule associate protein 1 light chain 3A (MAP1LC3A)
Nucleotide Protein
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