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KLRA1P killer cell lectin like receptor A1, pseudogene [ Homo sapiens (human) ]

Gene ID: 10748, updated on 23-Nov-2021

Summary

Official Symbol
KLRA1Pprovided by HGNC
Official Full Name
killer cell lectin like receptor A1, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:6372
See related
MIM:604274
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
Ly49; KLRA1; LY49L; KLRAP1; Ly-49L
Annotation information
Note: This locus was originally considered to be protein coding, but has been reclassified as a transcribed pseudogene because all associated transcripts are candidates for nonsense-mediated decay (NMD). PMID: 10369937 and 16492762 also state that this locus is likely to be a pseudogene. [13 Feb 2013]
Expression
Ubiquitous expression in skin (RPKM 2.9), lymph node (RPKM 2.6) and 23 other tissues See more
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Genomic context

See KLRA1P in Genome Data Viewer
Location:
12p13.2
Exon count:
7
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 12 NC_000012.12 (10588478..10599835, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (10741077..10752434, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene SLC25A39 pseudogene 2 Neighboring gene long intergenic non-protein coding RNA 2446 Neighboring gene uncharacterized LOC105376675 Neighboring gene mago homolog B, exon junction complex subunit Neighboring gene serine/threonine/tyrosine kinase 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • killer cell lectin-like receptor subfamily A pseudogene 1
  • killer cell lectin-like receptor subfamily A, member 1, pseudogene

Clone Names

  • MGC126520, MGC126522

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_028045.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC021049, BC069672, BC069697, BX950927, CN269037, DA776936

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p13 Primary Assembly

    Range
    10588478..10599835 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_006611.2: Suppressed sequence

    Description
    NM_006611.2: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
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