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cbx1b chromobox homolog 1b (HP1 beta homolog Drosophila) [ Nothobranchius furzeri (turquoise killifish) ]

Gene ID: 107387448, updated on 6-Jun-2024

Summary

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Gene symbol
cbx1b
Gene description
chromobox homolog 1b (HP1 beta homolog Drosophila)
See related
Ensembl:ENSNFUG00015011548
Gene type
protein coding
RefSeq status
MODEL
Organism
Nothobranchius furzeri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Nothobranchiidae; Nothobranchius
Also known as
cbx1
Orthologs
human zebrafish all
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Genomic context

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See cbx1b in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_03 current UI_Nfuz_MZM_1.0 (GCF_027789165.1) Unplaced Scaffold NW_026539926.1 (29982992..29999709, complement)
100 previous assembly Nfu_20140520 (GCF_001465895.1) sgr12 NC_029660.1 (12839299..12856003)

NW_026539926.1Genomic Context describing neighboring genes Neighboring gene CDK5 regulatory subunit associated protein 3 Neighboring gene nfe2 like bZIP transcription factor 1b Neighboring gene sorting nexin 11 Neighboring gene src kinase associated phosphoprotein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The transcript catalogue of the short-lived fish Nothobranchius furzeri provides insights into age-dependent changes of mRNA levels. Petzold A, et al. BMC Genomics, 2013 Mar 16. PMID 23496936, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables methylated histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of pericentric heterochromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chromobox protein homolog 1b
Names
chromobox 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027789165.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UI_Nfuz_MZM_1.0 Primary Assembly

Genomic

  1. NW_026539926.1 Reference UI_Nfuz_MZM_1.0 Primary Assembly

    Range
    29982992..29999709 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015962415.2 → XP_015817901.1  chromobox protein homolog 1b isoform X2

    UniProtKB/TrEMBL
    A0A1A8B216, A0A8C6NTC5
    Related
    ENSNFUP00015023867.1
    Conserved Domains (2) summary
    cd18650
    Location:44 → 92
    CD_HP1beta_Cbx1; chromodomain of heterochromatin protein 1 homolog beta
    cd18654
    Location:127 → 184
    CSD_HP1beta_Cbx1; chromo shadow domain of heterochromatin protein 1 homolog beta

  2. XM_054749389.1 → XP_054605364.1  chromobox protein homolog 1b isoform X1

    UniProtKB/TrEMBL
    A0A1A8B216

  3. XM_054749390.1 → XP_054605365.1  chromobox protein homolog 1b isoform X2

    UniProtKB/TrEMBL
    A0A1A8B216, A0A8C6NTC5
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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