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chs1 chitin synthase 1 [ Nothobranchius furzeri (turquoise killifish) ]

Gene ID: 107381858, updated on 14-Mar-2024

Summary

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Gene symbol
chs1
Gene description
chitin synthase 1
See related
Ensembl:ENSNFUG00015004374
Gene type
protein coding
RefSeq status
MODEL
Organism
Nothobranchius furzeri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Nothobranchiidae; Nothobranchius
Annotation information
Annotation category: partial on reference assembly
Orthologs
zebrafish all
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Genomic context

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See chs1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
34
Annotation release Status Assembly Chr Location
RS_2023_03 current UI_Nfuz_MZM_1.0 (GCF_027789165.1) Unplaced Scaffold NW_026539934.1 (23148517..23186068, complement)
100 previous assembly Nfu_20140520 (GCF_001465895.1) sgr07 NC_029655.1 (26631168..26669439, complement)

NW_026539934.1Genomic Context describing neighboring genes Neighboring gene acyl-coenzyme A thioesterase 1-like Neighboring gene DEAD (Asp-Glu-Ala-Asp) box helicase 21 Neighboring gene CUB and sushi domain-containing protein 1 Neighboring gene uncharacterized LOC129153275 Neighboring gene myomesin 2b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The transcript catalogue of the short-lived fish Nothobranchius furzeri provides insights into age-dependent changes of mRNA levels. Petzold A, et al. BMC Genomics, 2013 Mar 16. PMID 23496936, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitin synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall chitin biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell periphery IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell septum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chitin synthase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027789165.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UI_Nfuz_MZM_1.0 Primary Assembly

Genomic

  1. NW_026539934.1 Reference UI_Nfuz_MZM_1.0 Primary Assembly

    Range
    23148517..23186068 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054732191.1 → XP_054588166.1  chitin synthase 1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases