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dedd1 death effector domain-containing 1 [ Nothobranchius furzeri (turquoise killifish) ]

Gene ID: 107379505, updated on 14-Mar-2024

Summary

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Gene symbol
dedd1
Gene description
death effector domain-containing 1
See related
Ensembl:ENSNFUG00015002697
Gene type
protein coding
RefSeq status
MODEL
Organism
Nothobranchius furzeri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Nothobranchiidae; Nothobranchius
Also known as
dedd2
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_03 current UI_Nfuz_MZM_1.0 (GCF_027789165.1) Unplaced Scaffold NW_026539917.1 (53914931..53933656)
100 previous assembly Nfu_20140520 (GCF_001465895.1) sgr05 NC_029653.1 (62087087..62103515)

NW_026539917.1Genomic Context describing neighboring genes Neighboring gene ATPase Na+/K+ transporting subunit alpha 3b Neighboring gene Rab acceptor 1 (prenylated) Neighboring gene POU class 2 homeobox 2a Neighboring gene uncharacterized LOC107379508 Neighboring gene Ets2 repressor factor like 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The transcript catalogue of the short-lived fish Nothobranchius furzeri provides insights into age-dependent changes of mRNA levels. Petzold A, et al. BMC Genomics, 2013 Mar 16. PMID 23496936, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in extrinsic apoptotic signaling pathway via death domain receptors IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
death effector domain-containing 1
Names
death effector domain containing 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027789165.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UI_Nfuz_MZM_1.0 Primary Assembly

Genomic

  1. NW_026539917.1 Reference UI_Nfuz_MZM_1.0 Primary Assembly

    Range
    53914931..53933656
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054741095.1 → XP_054597070.1  death effector domain-containing 1

    UniProtKB/TrEMBL
    A0A8C6KKX0

  2. XM_015950286.2 → XP_015805772.1  death effector domain-containing 1

    UniProtKB/TrEMBL
    A0A8C6KKX0
    Related
    ENSNFUP00015005373.1
    Conserved Domains (1) summary
    cl14633
    Location:19 → 162
    DD; Death Domain Superfamily of protein-protein interaction domains

  3. XM_054741096.1 → XP_054597071.1  death effector domain-containing 1

    UniProtKB/TrEMBL
    A0A8C6KKX0
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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