U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

smg7 SMG7 nonsense mediated mRNA decay factor [ Cyprinodon variegatus (sheepshead minnow) ]

Gene ID: 107104340, updated on 14-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
smg7
Gene description
SMG7 nonsense mediated mRNA decay factor
See related
Ensembl:ENSCVAG00000011842
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinodon variegatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
100 current C_variegatus-1.0 (GCF_000732505.1) Unplaced Scaffold NW_015152152.1 (41441..58818, complement)

NW_015152152.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_015152152.1 Unplaced Scaffold Reference C_variegatus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables telomerase RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables telomeric DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of telomerase holoenzyme complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
protein SMG7

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Cyprinodon variegatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_variegatus-1.0 Primary Assembly

Genomic

  1. NW_015152152.1 Reference C_variegatus-1.0 Primary Assembly

    Range
    41441..58818 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015404327.1 → XP_015259813.1  protein SMG7 isoform X2

    UniProtKB/TrEMBL
    A0A3Q2E2B9
    Conserved Domains (3) summary
    sd00006
    Location:155 → 181
    TPR; TPR repeat [structural motif]
    pfam10373
    Location:172 → 436
    EST1_DNA_bind; Est1 DNA/RNA binding domain
    pfam10374
    Location:54 → 168
    EST1; Telomerase activating protein Est1

  2. XM_015404329.1 → XP_015259815.1  protein SMG7 isoform X4

    UniProtKB/TrEMBL
    A0A3Q2E2F7
    Related
    ENSCVAP00000026327.1, ENSCVAT00000016308.1
    Conserved Domains (3) summary
    sd00006
    Location:155 → 181
    TPR; TPR repeat [structural motif]
    pfam10373
    Location:172 → 436
    EST1_DNA_bind; Est1 DNA/RNA binding domain
    pfam10374
    Location:54 → 168
    EST1; Telomerase activating protein Est1

  3. XM_015404328.1 → XP_015259814.1  protein SMG7 isoform X3

    UniProtKB/TrEMBL
    A0A3Q2CVF8
    Related
    ENSCVAP00000009811.1, ENSCVAT00000029310.1
    Conserved Domains (3) summary
    sd00006
    Location:155 → 181
    TPR; TPR repeat [structural motif]
    pfam10373
    Location:172 → 436
    EST1_DNA_bind; Est1 DNA/RNA binding domain
    pfam10374
    Location:54 → 168
    EST1; Telomerase activating protein Est1

  4. XM_015404326.1 → XP_015259812.1  protein SMG7 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2E2B9
    Related
    ENSCVAP00000026351.1, ENSCVAT00000016341.1
    Conserved Domains (3) summary
    sd00006
    Location:155 → 181
    TPR; TPR repeat [structural motif]
    pfam10373
    Location:172 → 436
    EST1_DNA_bind; Est1 DNA/RNA binding domain
    pfam10374
    Location:54 → 168
    EST1; Telomerase activating protein Est1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.