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LOC107099520 ATP-dependent RNA helicase DDX19B [ Cyprinodon variegatus (sheepshead minnow) ]

Gene ID: 107099520, updated on 2-Nov-2023

Summary

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Gene symbol
LOC107099520
Gene description
ATP-dependent RNA helicase DDX19B
See related
Ensembl:ENSCVAG00000012986
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinodon variegatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current C_variegatus-1.0 (GCF_000732505.1) Unplaced Scaffold NW_015151333.1 (6718..17523)

NW_015151333.1Genomic Context describing neighboring genes Neighboring gene pseudouridine synthase like 1 Neighboring gene ArfGAP with coiled-coil, ankyrin repeat and PH domains 3b

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015151333.1 Unplaced Scaffold Reference C_variegatus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in poly(A)+ mRNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic stress granule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-dependent RNA helicase DDX19B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinodon variegatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_variegatus-1.0 Primary Assembly

Genomic

  1. NW_015151333.1 Reference C_variegatus-1.0 Primary Assembly

    Range
    6718..17523
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015397681.1 → XP_015253167.1  ATP-dependent RNA helicase DDX19B

    UniProtKB/TrEMBL
    A0A3Q2CY18, A0A3Q2CY66
    Related
    ENSCVAP00000010797.1, ENSCVAT00000017580.1
    Conserved Domains (2) summary
    PRK01297
    Location:11 → 473
    PRK01297; ATP-dependent RNA helicase RhlB; Provisional
    cl28899
    Location:84 → 312
    DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily
Nucleotide Protein
Heading Accession and Version

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