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rc3h2 ring finger and CCCH-type domains 2 [ Cyprinodon variegatus (sheepshead minnow) ]

Gene ID: 107088715, updated on 14-Mar-2024

Summary

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Gene symbol
rc3h2
Gene description
ring finger and CCCH-type domains 2
See related
Ensembl:ENSCVAG00000012202
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinodon variegatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
100 current C_variegatus-1.0 (GCF_000732505.1) Unplaced Scaffold NW_015150680.1 (292017..325786)

NW_015150680.1Genomic Context describing neighboring genes Neighboring gene Janus kinase 2a Neighboring gene zinc finger and BTB domain-containing protein 26-like Neighboring gene RAB GTPase activating protein 1 Neighboring gene G protein-coupled receptor 21 Neighboring gene spermatid perinuclear RNA binding protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015150680.1 Unplaced Scaffold Reference C_variegatus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
roquin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinodon variegatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_variegatus-1.0 Primary Assembly

Genomic

  1. NW_015150680.1 Reference C_variegatus-1.0 Primary Assembly

    Range
    292017..325786
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015381062.1 → XP_015236548.1  roquin-2 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2E331
    Related
    ENSCVAP00000026557.1, ENSCVAT00000016723.1
    Conserved Domains (2) summary
    pfam00642
    Location:411 → 435
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    pfam14634
    Location:14 → 55
    zf-RING_5; zinc-RING finger domain

  2. XM_015381061.1 → XP_015236547.1  roquin-2 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2E331
    Related
    ENSCVAP00000026538.1, ENSCVAT00000016701.1
    Conserved Domains (2) summary
    pfam00642
    Location:411 → 435
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    pfam14634
    Location:14 → 55
    zf-RING_5; zinc-RING finger domain

  3. XM_015381063.1 → XP_015236549.1  roquin-2 isoform X2

    Conserved Domains (2) summary
    pfam00642
    Location:411 → 435
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    pfam14634
    Location:14 → 55
    zf-RING_5; zinc-RING finger domain
Nucleotide Protein
Heading Accession and Version

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