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ppfibp2a PPFIA binding protein 2a [ Cyprinodon variegatus (sheepshead minnow) ]

Gene ID: 107084465, updated on 14-Mar-2024

Summary

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Gene symbol
ppfibp2a
Gene description
PPFIA binding protein 2a
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinodon variegatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
100 current C_variegatus-1.0 (GCF_000732505.1) Unplaced Scaffold NW_015150458.1 (1528549..1544973, complement)

NW_015150458.1Genomic Context describing neighboring genes Neighboring gene chromodomain Y like 2 Neighboring gene MAF bZIP transcription factor a Neighboring gene synaptotagmin IXa Neighboring gene spondin 1a

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015150458.1 Unplaced Scaffold Reference C_variegatus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in neuromuscular junction development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in presynaptic active zone IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
liprin-beta-2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinodon variegatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_variegatus-1.0 Primary Assembly

Genomic

  1. NW_015150458.1 Reference C_variegatus-1.0 Primary Assembly

    Range
    1528549..1544973 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015374356.1 → XP_015229842.1  liprin-beta-2-like isoform X1

    Conserved Domains (4) summary
    cd09563
    Location:509 → 572
    SAM_liprin-beta1,2_repeat1; SAM domain of liprin-beta1,2 proteins repeat 1
    cd09566
    Location:583 → 645
    SAM_liprin-beta1,2_repeat2; SAM domain of liprin-beta1,2 proteins repeat 2
    cd09569
    Location:668 → 739
    SAM_liprin-beta1,2_repeat3; SAM domain of liprin-beta proteins repeat 3
    smart00454
    Location:509 → 573
    SAM; Sterile alpha motif

  2. XM_015374359.1 → XP_015229845.1  liprin-beta-2-like isoform X2

    Conserved Domains (4) summary
    cd09563
    Location:498 → 561
    SAM_liprin-beta1,2_repeat1; SAM domain of liprin-beta1,2 proteins repeat 1
    cd09566
    Location:572 → 634
    SAM_liprin-beta1,2_repeat2; SAM domain of liprin-beta1,2 proteins repeat 2
    cd09569
    Location:657 → 728
    SAM_liprin-beta1,2_repeat3; SAM domain of liprin-beta proteins repeat 3
    smart00454
    Location:498 → 562
    SAM; Sterile alpha motif

  3. XM_015374365.1 → XP_015229851.1  liprin-beta-2-like isoform X3

    Conserved Domains (4) summary
    cd09563
    Location:488 → 551
    SAM_liprin-beta1,2_repeat1; SAM domain of liprin-beta1,2 proteins repeat 1
    cd09566
    Location:562 → 624
    SAM_liprin-beta1,2_repeat2; SAM domain of liprin-beta1,2 proteins repeat 2
    cd09569
    Location:647 → 718
    SAM_liprin-beta1,2_repeat3; SAM domain of liprin-beta proteins repeat 3
    smart00454
    Location:488 → 552
    SAM; Sterile alpha motif
Nucleotide Protein
Heading Accession and Version

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