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zc3h12d zinc finger CCCH-type containing 12D [ Poecilia latipinna (sailfin molly) ]

Gene ID: 106953814, updated on 2-Nov-2023

Summary

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Gene symbol
zc3h12d
Gene description
zinc finger CCCH-type containing 12D
See related
Ensembl:ENSPLAG00000001211
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia latipinna
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
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Genomic context

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Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current P_latipinna-1.0 (GCF_001443285.1) Unplaced Scaffold NW_015113220.1 (274729..285225, complement)

NW_015113220.1Genomic Context describing neighboring genes Neighboring gene cyclin-dependent kinase 19 Neighboring gene uncharacterized LOC106953817 Neighboring gene uncharacterized LOC106953816 Neighboring gene TGF-beta activated kinase 1 (MAP3K7) binding protein 2 Neighboring gene peptidylprolyl isomerase (cyclophilin)-like 4 Neighboring gene glycoprotein integral membrane 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015113220.1 Unplaced Scaffold Reference P_latipinna-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA endonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in 3'-UTR-mediated mRNA destabilization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear-transcribed mRNA catabolic process, RNase MRP-dependent IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic ribonucleoprotein granule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ribonuclease ZC3H12D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia latipinna Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_latipinna-1.0

Genomic

  1. NW_015113220.1 Reference P_latipinna-1.0

    Range
    274729..285225 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015042855.1 → XP_014898341.1  probable ribonuclease ZC3H12D

    UniProtKB/TrEMBL
    A0A3B3TGP1
    Related
    ENSPLAP00000000395.1, ENSPLAT00000016517.1
    Conserved Domains (1) summary
    pfam11977
    Location:84 → 240
    RNase_Zc3h12a; Zc3h12a-like Ribonuclease NYN domain

  2. XM_015042856.1 → XP_014898342.1  probable ribonuclease ZC3H12D

    UniProtKB/TrEMBL
    A0A3B3TGP1
    Conserved Domains (1) summary
    pfam11977
    Location:84 → 240
    RNase_Zc3h12a; Zc3h12a-like Ribonuclease NYN domain
Nucleotide Protein
Heading Accession and Version

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