U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

zgc:163098 uncharacterized LOC106916664 [ Poecilia mexicana ]

Gene ID: 106916664, updated on 13-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
zgc:163098
Gene description
uncharacterized LOC106916664
See related
Ensembl:ENSPMEG00000017413
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia mexicana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
100 current P_mexicana-1.0 (GCF_001443325.1) Unplaced Scaffold NW_015094723.1 (304920..316250, complement)

NW_015094723.1Genomic Context describing neighboring genes Neighboring gene kelch-like family member 13 Neighboring gene WD repeat domain 44 Neighboring gene leucine-rich repeats and calponin homology (CH) domain containing 2 Neighboring gene uncharacterized LOC106916670 Neighboring gene interleukin 13 receptor, alpha 2

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_015094723.1 Unplaced Scaffold Reference P_mexicana-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
U2 snRNP-associated SURP motif-containing protein-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Poecilia mexicana Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_mexicana-1.0

Genomic

  1. NW_015094723.1 Reference P_mexicana-1.0

    Range
    304920..316250 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014985099.1 → XP_014840585.1  U2 snRNP-associated SURP motif-containing protein-like isoform X2

    Conserved Domains (4) summary
    cd12223
    Location:170 → 252
    RRM_SR140; RNA recognition motif (RRM) in U2-associated protein SR140 and similar proteins
    pfam01805
    Location:323 → 373
    Surp; Surp module
    pfam08312
    Location:729 → 771
    cwf21; cwf21 domain
    cl02544
    Location:437 → 571
    VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal ...

  2. XM_014985098.1 → XP_014840584.1  U2 snRNP-associated SURP motif-containing protein-like isoform X1

    UniProtKB/TrEMBL
    A0A3B3XIZ9
    Related
    ENSPMEP00000014955.1, ENSPMET00000032801.1
    Conserved Domains (4) summary
    cd12223
    Location:170 → 252
    RRM_SR140; RNA recognition motif (RRM) in U2-associated protein SR140 and similar proteins
    pfam01805
    Location:323 → 373
    Surp; Surp module
    pfam08312
    Location:730 → 772
    cwf21; cwf21 domain
    cl02544
    Location:437 → 571
    VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal ...

  3. XM_014985100.1 → XP_014840586.1  U2 snRNP-associated SURP motif-containing protein-like isoform X3

    Conserved Domains (4) summary
    cd12223
    Location:11 → 93
    RRM_SR140; RNA recognition motif (RRM) in U2-associated protein SR140 and similar proteins
    pfam01805
    Location:164 → 214
    Surp; Surp module
    pfam08312
    Location:571 → 613
    cwf21; cwf21 domain
    cl02544
    Location:278 → 412
    VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases