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LOC106874158 stromal membrane-associated protein 1 [ Octopus bimaculoides (California two-spot octopus) ]

Gene ID: 106874158, updated on 23-Nov-2023

Summary

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Gene symbol
LOC106874158
Gene description
stromal membrane-associated protein 1
Locus tag
OCBIM_22018806mg
See related
EnsemblRapid:LOC106874158
Gene type
protein coding
RefSeq status
MODEL
Organism
Octopus bimaculoides
Lineage
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Cephalopoda; Coleoidea; Octopodiformes; Octopoda; Incirrata; Octopodidae; Octopus
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Genomic context

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Location:
chromosome: 10
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_01 current ASM119413v2 (GCF_001194135.2) 10 NC_068990.1 (45616402..45744960, complement)
100 previous assembly Octopus_bimaculoides_v2_0 (GCF_001194135.1) Unplaced Scaffold NW_014654049.1 (186532..313225, complement)

Chromosome 10 - NC_068990.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106874115 Neighboring gene polyadenylate-binding protein 4-like Neighboring gene uncharacterized LOC128248833 Neighboring gene uncharacterized LOC128248898 Neighboring gene serine/threonine-protein kinase PLK1 Neighboring gene tubulin polymerization-promoting protein family member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
stromal membrane-associated protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001194135.2-RS_

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM119413v2 Primary Assembly

Genomic

  1. NC_068990.1 Reference ASM119413v2 Primary Assembly

    Range
    45616402..45744960 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014921812.2 → XP_014777298.1  stromal membrane-associated protein 1 isoform X3

    Related
    XP_014777298.1, XM_014921812.2
    Conserved Domains (2) summary
    COG5347
    Location:18 → 305
    COG5347; GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]
    pfam01412
    Location:18 → 132
    ArfGap; Putative GTPase activating protein for Arf

  2. XM_014921785.2 → XP_014777271.1  stromal membrane-associated protein 1 isoform X1

    Related
    XP_014777271.1, XM_014921785.2
    Conserved Domains (2) summary
    COG5347
    Location:18 → 313
    COG5347; GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]
    pfam01412
    Location:18 → 132
    ArfGap; Putative GTPase activating protein for Arf

  3. XM_014921802.2 → XP_014777288.1  stromal membrane-associated protein 1 isoform X2

    Related
    XP_014777288.1, XM_014921802.2
    Conserved Domains (2) summary
    COG5347
    Location:18 → 306
    COG5347; GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]
    pfam01412
    Location:18 → 132
    ArfGap; Putative GTPase activating protein for Arf
Nucleotide Protein
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