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LOC106772284 glutamine--tRNA ligase [ Vigna radiata ]

Gene ID: 106772284, updated on 11-Jan-2024

Summary

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Gene symbol
LOC106772284
Gene description
glutamine--tRNA ligase
Gene type
protein coding
RefSeq status
MODEL
Organism
Vigna radiata
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Vigna
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Genomic context

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Location:
chromosome: 8
Exon count:
24
Annotation release Status Assembly Chr Location
101 current Vradiata_ver6 (GCF_000741045.1) 8 NC_028358.1 (43416146..43425838)

Chromosome 8 - NC_028358.1Genomic Context describing neighboring genes Neighboring gene pre-mRNA-splicing factor 18-like Neighboring gene coiled-coil domain-containing protein 115 Neighboring gene transcription factor MYB62 Neighboring gene putative membrane-bound O-acyltransferase C24H6.01c

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_028358.1 Chromosome 8 Reference Vradiata_ver6 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Characterization of the Mung Bean Transcriptome and Transcriptomic Analysis of Adventitious Rooting in Seedlings Using RNA-Seq. Li SW, et al. PLoS One, 2015. PMID 26177103, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glutamine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glutaminyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glutamine--tRNA ligase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vigna radiata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Vradiata_ver6 Primary Assembly

Genomic

  1. NC_028358.1 Reference Vradiata_ver6 Primary Assembly

    Range
    43416146..43425838
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014658582.2 → XP_014514068.1  glutamine--tRNA ligase

    UniProtKB/TrEMBL
    A0A1S3V788
    Conserved Domains (5) summary
    PLN02859
    Location:6 → 793
    PLN02859; glutamine-tRNA ligase
    pfam00749
    Location:269 → 574
    tRNA-synt_1c; tRNA synthetases class I (E and Q), catalytic domain
    pfam03950
    Location:577 → 768
    tRNA-synt_1c_C; tRNA synthetases class I (E and Q), anti-codon binding domain
    pfam04557
    Location:173 → 262
    tRNA_synt_1c_R2; Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2
    pfam04558
    Location:17 → 169
    tRNA_synt_1c_R1; Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1

  2. XM_014658581.2 → XP_014514067.1  glutamine--tRNA ligase

    UniProtKB/TrEMBL
    A0A1S3V788
    Conserved Domains (5) summary
    PLN02859
    Location:6 → 793
    PLN02859; glutamine-tRNA ligase
    pfam00749
    Location:269 → 574
    tRNA-synt_1c; tRNA synthetases class I (E and Q), catalytic domain
    pfam03950
    Location:577 → 768
    tRNA-synt_1c_C; tRNA synthetases class I (E and Q), anti-codon binding domain
    pfam04557
    Location:173 → 262
    tRNA_synt_1c_R2; Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2
    pfam04558
    Location:17 → 169
    tRNA_synt_1c_R1; Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1
Nucleotide Protein
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