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LOC106756120 protein transport protein SEC31 homolog B [ Vigna radiata ]

Gene ID: 106756120, updated on 11-Jan-2024

Summary

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Gene symbol
LOC106756120
Gene description
protein transport protein SEC31 homolog B
Gene type
protein coding
RefSeq status
MODEL
Organism
Vigna radiata
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Vigna
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Genomic context

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Location:
chromosome: 2
Exon count:
22
Annotation release Status Assembly Chr Location
101 current Vradiata_ver6 (GCF_000741045.1) 2 NC_028352.1 (779330..790116, complement)

Chromosome 2 - NC_028352.1Genomic Context describing neighboring genes Neighboring gene DNA-directed RNA polymerases II, IV and V subunit 11 Neighboring gene cation/H(+) antiporter 28 Neighboring gene uncharacterized LOC106778078 Neighboring gene methyltransferase-like protein 13

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_028352.1 Chromosome 2 Reference Vradiata_ver6 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in COPII-coated vesicle cargo loading IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of COPII vesicle coat IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum exit site IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein transport protein SEC31 homolog B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vigna radiata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Vradiata_ver6 Primary Assembly

Genomic

  1. NC_028352.1 Reference Vradiata_ver6 Primary Assembly

    Range
    779330..790116 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014638396.2 → XP_014493882.1  protein transport protein SEC31 homolog B

    UniProtKB/TrEMBL
    A0A1S3TJF0
    Conserved Domains (4) summary
    COG2319
    Location:12 → 336
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:10 → 60
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:86 → 343
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    cl14807
    Location:557 → 780
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
Nucleotide Protein
Heading Accession and Version

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