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LOC106752988 synaptotagmin-4 [ Vigna radiata ]

Gene ID: 106752988, updated on 11-Jan-2024

Summary

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Gene symbol
LOC106752988
Gene description
synaptotagmin-4
Gene type
protein coding
RefSeq status
MODEL
Organism
Vigna radiata
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Vigna
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
101 current Vradiata_ver6 (GCF_000741045.1) Unplaced Scaffold NW_014543108.1 (661026..669922)

NW_014543108.1Genomic Context describing neighboring genes Neighboring gene phosphopantothenoylcysteine decarboxylase-like Neighboring gene cucumber peeling cupredoxin Neighboring gene polygalacturonate 4-alpha-galacturonosyltransferase Neighboring gene probable fructokinase-7

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_014543108 Unplaced Scaffold Reference Vradiata_ver6 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Characterization of the Mung Bean Transcriptome and Transcriptomic Analysis of Adventitious Rooting in Seedlings Using RNA-Seq. Li SW, et al. PLoS One, 2015. PMID 26177103, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptotagmin-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vigna radiata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Vradiata_ver6 Primary Assembly

Genomic

  1. NW_014543108.1 Reference Vradiata_ver6 Primary Assembly

    Range
    661026..669922
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014634769.2 → XP_014490255.1  synaptotagmin-4

    UniProtKB/TrEMBL
    A0A1S3T909
    Conserved Domains (2) summary
    pfam05642
    Location:457 → 574
    Sporozoite_P67; Sporozoite P67 surface antigen
    cl27773
    Location:67 → 396
    SMP_LBD; Synaptotagmin-like mitochondrial-lipid-binding domain

  2. XM_014634770.2 → XP_014490256.1  synaptotagmin-4

    UniProtKB/TrEMBL
    A0A1S3T909
    Conserved Domains (2) summary
    pfam05642
    Location:457 → 574
    Sporozoite_P67; Sporozoite P67 surface antigen
    cl27773
    Location:67 → 396
    SMP_LBD; Synaptotagmin-like mitochondrial-lipid-binding domain

  3. XM_022777350.1 → XP_022633071.1  synaptotagmin-4

    UniProtKB/TrEMBL
    A0A1S3T909
    Conserved Domains (2) summary
    pfam05642
    Location:457 → 574
    Sporozoite_P67; Sporozoite P67 surface antigen
    cl27773
    Location:67 → 396
    SMP_LBD; Synaptotagmin-like mitochondrial-lipid-binding domain

  4. XM_014634768.2 → XP_014490254.1  synaptotagmin-4

    UniProtKB/TrEMBL
    A0A1S3T909
    Conserved Domains (2) summary
    pfam05642
    Location:457 → 574
    Sporozoite_P67; Sporozoite P67 surface antigen
    cl27773
    Location:67 → 396
    SMP_LBD; Synaptotagmin-like mitochondrial-lipid-binding domain
Nucleotide Protein
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