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DNAlig1 DNA ligase 1 [ Dinoponera quadriceps ]

Gene ID: 106747102, updated on 24-May-2024

Summary

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Gene symbol
DNAlig1
Gene description
DNA ligase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Dinoponera quadriceps
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Ponerinae; Ponerini; Dinoponera
Orthologs
fruit fly all
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Genomic context

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Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
100 current ASM131382v1 (GCF_001313825.1) Unplaced Scaffold NW_014556175.1 (28078..33123, complement)

NW_014556175.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106747099 Neighboring gene CD9 antigen

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_014556175.1 Unplaced Scaffold Reference ASM131382v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome analysis in venom gland of the predatory giant ant Dinoponera quadriceps: insights into the polypeptide toxin arsenal of hymenopterans. Torres AF, et al. PLoS One, 2014. PMID 24498135, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA ligase (ATP) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in Okazaki fragment processing involved in mitotic DNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lagging strand elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA ligase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Dinoponera quadriceps Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM131382v1

Genomic

  1. NW_014556175.1 Reference ASM131382v1

    Range
    28078..33123 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014624387.1 → XP_014479873.1  DNA ligase 1 isoform X2

    UniProtKB/TrEMBL
    A0A6P3XPH6
    Conserved Domains (4) summary
    cd07969
    Location:663 → 808
    OBF_DNA_ligase_I; The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase I is a DNA-binding module that is part of the catalytic core unit
    cd07900
    Location:440 → 658
    Adenylation_DNA_ligase_I_Euk; Adenylation domain of eukaryotic DNA Ligase I
    PLN03113
    Location:80 → 825
    PLN03113; DNA ligase 1; Provisional
    pfam04675
    Location:197 → 368
    DNA_ligase_A_N; DNA ligase N terminus

  2. XM_014624386.1 → XP_014479872.1  DNA ligase 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P3XNQ0
    Conserved Domains (4) summary
    cd07969
    Location:677 → 822
    OBF_DNA_ligase_I; The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase I is a DNA-binding module that is part of the catalytic core unit
    cd07900
    Location:454 → 672
    Adenylation_DNA_ligase_I_Euk; Adenylation domain of eukaryotic DNA Ligase I
    PLN03113
    Location:94 → 839
    PLN03113; DNA ligase 1; Provisional
    pfam04675
    Location:211 → 382
    DNA_ligase_A_N; DNA ligase N terminus

  3. XM_014624388.1 → XP_014479874.1  DNA ligase 1 isoform X3

    UniProtKB/TrEMBL
    A0A6P3XPE4
    Conserved Domains (2) summary
    cd07900
    Location:454 → 642
    Adenylation_DNA_ligase_I_Euk; Adenylation domain of eukaryotic DNA Ligase I
    pfam04675
    Location:211 → 382
    DNA_ligase_A_N; DNA ligase N terminus
Nucleotide Protein
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