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LOC106743683 paired amphipathic helix protein Sin3b [ Dinoponera quadriceps ]

Gene ID: 106743683, updated on 25-Jan-2024

Summary

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Gene symbol
LOC106743683
Gene description
paired amphipathic helix protein Sin3b
Gene type
protein coding
RefSeq status
MODEL
Organism
Dinoponera quadriceps
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Ponerinae; Ponerini; Dinoponera
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Genomic context

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Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
100 current ASM131382v1 (GCF_001313825.1) Unplaced Scaffold NW_014555251.1 (35496..53851, complement)

NW_014555251.1Genomic Context describing neighboring genes Neighboring gene arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 Neighboring gene uncharacterized LOC106743693 Neighboring gene mitochondrial tRNA-specific 2-thiouridylase 1 Neighboring gene endothelin-converting enzyme 1-like Neighboring gene segment polarity protein dishevelled homolog DVL-3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_014555251.1 Unplaced Scaffold Reference ASM131382v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
paired amphipathic helix protein Sin3a; paired amphipathic helix protein Sin3b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Dinoponera quadriceps Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM131382v1

Genomic

  1. NW_014555251.1 Reference ASM131382v1

    Range
    35496..53851 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014617770.1 → XP_014473256.1  paired amphipathic helix protein Sin3b isoform X3

    UniProtKB/TrEMBL
    A0A6P3X4H9
    Conserved Domains (4) summary
    COG5602
    Location:176 → 1333
    Sin3; Histone deacetylase complex, regulatory component SIN3 [Chromatin structure and dynamics]
    pfam02671
    Location:202 → 246
    PAH; Paired amphipathic helix repeat
    pfam08295
    Location:726 → 820
    Sin3_corepress; Sin3 family co-repressor
    pfam16879
    Location:1109 → 1464
    Sin3a_C; C-terminal domain of Sin3a protein

  2. XM_014617768.1 → XP_014473254.1  paired amphipathic helix protein Sin3b isoform X1

    UniProtKB/TrEMBL
    A0A6P3X5T0
    Conserved Domains (4) summary
    COG5602
    Location:176 → 1333
    Sin3; Histone deacetylase complex, regulatory component SIN3 [Chromatin structure and dynamics]
    pfam02671
    Location:202 → 246
    PAH; Paired amphipathic helix repeat
    pfam08295
    Location:726 → 820
    Sin3_corepress; Sin3 family co-repressor
    pfam16879
    Location:1109 → 1487
    Sin3a_C; C-terminal domain of Sin3a protein

  3. XM_014617771.1 → XP_014473257.1  paired amphipathic helix protein Sin3a isoform X4

    UniProtKB/TrEMBL
    A0A6P3X4U1
    Conserved Domains (4) summary
    COG5602
    Location:176 → 1328
    Sin3; Histone deacetylase complex, regulatory component SIN3 [Chromatin structure and dynamics]
    pfam02671
    Location:202 → 246
    PAH; Paired amphipathic helix repeat
    pfam08295
    Location:721 → 815
    Sin3_corepress; Sin3 family co-repressor
    pfam16879
    Location:1104 → 1459
    Sin3a_C; C-terminal domain of Sin3a protein

  4. XM_014617769.1 → XP_014473255.1  paired amphipathic helix protein Sin3a isoform X2

    UniProtKB/TrEMBL
    A0A6P3X4L1
    Conserved Domains (4) summary
    COG5602
    Location:176 → 1328
    Sin3; Histone deacetylase complex, regulatory component SIN3 [Chromatin structure and dynamics]
    pfam02671
    Location:202 → 246
    PAH; Paired amphipathic helix repeat
    pfam08295
    Location:721 → 815
    Sin3_corepress; Sin3 family co-repressor
    pfam16879
    Location:1104 → 1482
    Sin3a_C; C-terminal domain of Sin3a protein
Nucleotide Protein
Heading Accession and Version

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