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LOC106579850 ubiquitin-like protein 4A-B [ Salmo salar (Atlantic salmon) ]

Gene ID: 106579850, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106579850
Gene description
ubiquitin-like protein 4A-B
See related
Ensembl:ENSSSAG00000049676
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
UBL4A; ubl4ab
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Genomic context

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Location:
chromosome: ssa20
Exon count:
5
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa20 NC_059461.1 (24988038..24991351)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa20 NC_027319.1 (23698044..23701337)

Chromosome ssa20 - NC_059461.1Genomic Context describing neighboring genes Neighboring gene bridging integrator 3 Neighboring gene acyl-CoA synthetase long chain family member 2 Neighboring gene cGMP-dependent protein kinase 1 Neighboring gene dynamin 1-like Neighboring gene ras-related protein Rab-7a Neighboring gene dispatched RND transporter family member 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in post-translational protein targeting to endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin-like protein 4A-B
Names
Ubiquitin-like protein 4A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059461.1 Reference Ssal_v3.1

    Range
    24988038..24991351
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014160138.2 → XP_014015613.1  ubiquitin-like protein 4A-B

    UniProtKB/Swiss-Prot
    B5X9S9
    UniProtKB/TrEMBL
    A0A1S3NJL6
    Conserved Domains (2) summary
    cd01807
    Location:1 → 72
    Ubl_UBL4A_like; ubiquitin-like (Ubl) domain found in ubiquitin-like proteins UBL4A and similar proteins
    pfam17840
    Location:91 → 137
    Tugs; Tethering Ubl4a to BAGS domain

  2. XM_014160139.2 → XP_014015614.1  ubiquitin-like protein 4A-B

    UniProtKB/Swiss-Prot
    B5X9S9
    UniProtKB/TrEMBL
    A0A1S3NJL6
    Related
    ENSSSAP00000049518.1, ENSSSAT00000077429.2
    Conserved Domains (2) summary
    cd01807
    Location:1 → 72
    Ubl_UBL4A_like; ubiquitin-like (Ubl) domain found in ubiquitin-like proteins UBL4A and similar proteins
    pfam17840
    Location:91 → 137
    Tugs; Tethering Ubl4a to BAGS domain

RNA

  1. XR_001322761.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
B5X9S9.1 GenPept UniProtKB/Swiss-Prot:B5X9S9

Gene LinkOut

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