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LOC106567421 heterogeneous nuclear ribonucleoprotein H-like [ Salmo salar (Atlantic salmon) ]

Gene ID: 106567421, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106567421
Gene description
heterogeneous nuclear ribonucleoprotein H-like
See related
Ensembl:ENSSSAG00000001128
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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Location:
chromosome: ssa13
Exon count:
11
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa13 NC_059454.1 (54309690..54320560)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa13 NC_027312.1 (49661567..49672420)

Chromosome ssa13 - NC_059454.1Genomic Context describing neighboring genes Neighboring gene cysteine-rich and transmembrane domain-containing protein 1 Neighboring gene ankyrin repeat and KH domain-containing protein 1-like Neighboring gene proheparin-binding EGF-like growth factor Neighboring gene prefoldin subunit 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heterogeneous nuclear ribonucleoprotein H-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059454.1 Reference Ssal_v3.1

    Range
    54309690..54320560
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014136653.2 → XP_013992128.1  heterogeneous nuclear ribonucleoprotein H-like isoform X5

    UniProtKB/TrEMBL
    A0A1S3LMC0
    Conserved Domains (4) summary
    pfam08080
    Location:228 → 259
    zf-RNPHF; RNPHF zinc finger
    COG0724
    Location:258 → 314
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12734
    Location:258 → 333
    RRM3_hnRNPH_hnRNPH2_hnRNPF; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein hnRNP H , hnRNP H2, hnRNP F and similar proteins
    cl17169
    Location:89 → 183
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_014136648.2 → XP_013992123.1  heterogeneous nuclear ribonucleoprotein H-like isoform X1

    UniProtKB/TrEMBL
    A0A1S3LMB4
    Conserved Domains (4) summary
    pfam08080
    Location:228 → 259
    zf-RNPHF; RNPHF zinc finger
    COG0724
    Location:258 → 314
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12734
    Location:258 → 333
    RRM3_hnRNPH_hnRNPH2_hnRNPF; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein hnRNP H , hnRNP H2, hnRNP F and similar proteins
    cl17169
    Location:89 → 183
    RRM_SF; RNA recognition motif (RRM) superfamily

  3. XM_014136654.2 → XP_013992129.1  heterogeneous nuclear ribonucleoprotein H-like isoform X6

    UniProtKB/TrEMBL
    A0A1S3LNL2
    Related
    ENSSSAP00000002301.2, ENSSSAT00000002467.2
    Conserved Domains (4) summary
    pfam08080
    Location:228 → 259
    zf-RNPHF; RNPHF zinc finger
    COG0724
    Location:258 → 314
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12734
    Location:258 → 333
    RRM3_hnRNPH_hnRNPH2_hnRNPF; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein hnRNP H , hnRNP H2, hnRNP F and similar proteins
    cl17169
    Location:89 → 183
    RRM_SF; RNA recognition motif (RRM) superfamily

  4. XM_014136651.2 → XP_013992126.1  heterogeneous nuclear ribonucleoprotein H-like isoform X3

    UniProtKB/TrEMBL
    A0A1S3LML6
    Conserved Domains (4) summary
    pfam08080
    Location:228 → 259
    zf-RNPHF; RNPHF zinc finger
    COG0724
    Location:58 → 168
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12506
    Location:258 → 324
    RRM3_hnRNPH_CRSF1_like; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein hnRNP H protein family, G-rich sequence factor 1 (GRSF-1) and similar proteins
    cl17169
    Location:89 → 183
    RRM_SF; RNA recognition motif (RRM) superfamily

  5. XM_014136649.2 → XP_013992124.1  heterogeneous nuclear ribonucleoprotein H-like isoform X2

    UniProtKB/TrEMBL
    A0A1S3LNK7
    Related
    ENSSSAP00000125685.1, ENSSSAT00000209216.1
    Conserved Domains (3) summary
    COG0724
    Location:255 → 311
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12734
    Location:255 → 330
    RRM3_hnRNPH_hnRNPH2_hnRNPF; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein hnRNP H , hnRNP H2, hnRNP F and similar proteins
    cl17169
    Location:89 → 183
    RRM_SF; RNA recognition motif (RRM) superfamily

  6. XM_014136652.2 → XP_013992127.1  heterogeneous nuclear ribonucleoprotein H-like isoform X4

    UniProtKB/TrEMBL
    A0A1S3LMD5
    Conserved Domains (3) summary
    COG0724
    Location:58 → 168
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12506
    Location:255 → 321
    RRM3_hnRNPH_CRSF1_like; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein hnRNP H protein family, G-rich sequence factor 1 (GRSF-1) and similar proteins
    cl17169
    Location:89 → 183
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
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