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LOC106566847 AMP deaminase 1 [ Salmo salar (Atlantic salmon) ]

Gene ID: 106566847, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106566847
Gene description
AMP deaminase 1
See related
Ensembl:ENSSSAG00000041446
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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Location:
chromosome: ssa13
Exon count:
16
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa13 NC_059454.1 (29572276..29595715, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa13 NC_027312.1 (26077111..26100543)

Chromosome ssa13 - NC_059454.1Genomic Context describing neighboring genes Neighboring gene breast carcinoma amplified sequence 2 Neighboring gene DENN domain-containing protein 2C Neighboring gene uncharacterized LOC106566848 Neighboring gene cold shock domain-containing protein E1-like Neighboring gene Ras association domain family member 11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Extensive local gene duplication and functional divergence among paralogs in Atlantic salmon. Warren IA, et al. Genome Biol Evol, 2014 Jun 19. PMID 24951567, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables AMP deaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in AMP metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in IMP salvage IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
AMP deaminase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059454.1 Reference Ssal_v3.1

    Range
    29572276..29595715 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014135321.2 → XP_013990796.1  AMP deaminase 1 isoform X1

    UniProtKB/TrEMBL
    A0A1S3LIP2
    Related
    ENSSSAP00000040495.2, ENSSSAT00000066760.2
    Conserved Domains (2) summary
    PLN03055
    Location:180 → 738
    PLN03055; AMP deaminase; Provisional
    cd01319
    Location:236 → 732
    AMPD; AMP deaminase (AMPD) catalyzes the hydrolytic deamination of adensosine monophosphate (AMP) at position 6 of the adenine nucleotide ring. AMPD is a diverse and highly regulated eukaryotic key enzyme of the adenylate catabolic pathway.

  2. XM_014135323.2 → XP_013990798.1  AMP deaminase 1 isoform X2

    UniProtKB/TrEMBL
    A0A1S3LIL6
    Related
    ENSSSAP00000040514.2, ENSSSAT00000066787.2
    Conserved Domains (2) summary
    PLN03055
    Location:176 → 734
    PLN03055; AMP deaminase; Provisional
    cd01319
    Location:232 → 728
    AMPD; AMP deaminase (AMPD) catalyzes the hydrolytic deamination of adensosine monophosphate (AMP) at position 6 of the adenine nucleotide ring. AMPD is a diverse and highly regulated eukaryotic key enzyme of the adenylate catabolic pathway.
Nucleotide Protein
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