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zgc:171566 zgc:171566 [ Salmo salar (Atlantic salmon) ]

Gene ID: 106566184, updated on 13-Mar-2024

Summary

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Gene symbol
zgc:171566
Gene description
zgc:171566
See related
Ensembl:ENSSSAG00000042676
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: ssa12
Exon count:
8
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa12 NC_059453.1 (93617760..93629313, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa12 NC_027311.1 (85143445..85154576)

Chromosome ssa12 - NC_059453.1Genomic Context describing neighboring genes Neighboring gene MCM2 minichromosome maintenance deficient 2, mitotin (S. cerevisiae) Neighboring gene podocalyxin-like protein 2 Neighboring gene uncharacterized LOC123725576 Neighboring gene sodium- and chloride-dependent taurine transporter

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables gamma-glutamyl-peptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tetrahydrofolylpolyglutamate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in vacuole IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zgc:171566

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059453.1 Reference Ssal_v3.1

    Range
    93617760..93629313 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014134057.2 → XP_013989532.1  zgc:171566

    UniProtKB/TrEMBL
    A0A1S3LEZ6
    Related
    ENSSSAP00000176534.1, ENSSSAT00000193560.1
    Conserved Domains (2) summary
    pfam07722
    Location:32 → 244
    Peptidase_C26; Peptidase C26
    cl00020
    Location:34 → 304
    GAT_1; Type 1 glutamine amidotransferase (GATase1)-like domain
Nucleotide Protein
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