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LOC106388071 chloride conductance regulatory protein ICln [ Brassica napus (rape) ]

Gene ID: 106388071, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106388071
Gene description
chloride conductance regulatory protein ICln
Locus tag
HID58_092164
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica napus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
102 current Da-Ae (GCF_020379485.1) Unplaced Scaffold NW_026016819.1 (70136..72457, complement)
101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) C9 NC_027775.2 (41964038..41966275, complement)

NW_026016819.1Genomic Context describing neighboring genes Neighboring gene pectinesterase inhibitor 11 Neighboring gene probable serine/threonine protein kinase IRE Neighboring gene uncharacterized LOC125605564 Neighboring gene protein GAMETE CELL DEFECTIVE 1, mitochondrial-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell volume homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chloride transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mRNA cis splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spliceosomal snRNP assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of methylosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of pICln-Sm protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chloride conductance regulatory protein ICln

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Da-Ae Primary Assembly

Genomic

  1. NW_026016819.1 Reference Da-Ae Primary Assembly

    Range
    70136..72457 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013828049.3 → XP_013683503.1  chloride conductance regulatory protein ICln

    UniProtKB/TrEMBL
    A0A078JJZ6
    Conserved Domains (1) summary
    pfam03517
    Location:47 → 147
    Voldacs; Regulator of volume decrease after cellular swelling
Nucleotide Protein
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