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LOC106341992 clathrin interactor EPSIN 2-like [ Brassica oleracea (wild cabbage) ]

Gene ID: 106341992, updated on 11-Sep-2024

Summary

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Gene symbol
LOC106341992
Gene description
clathrin interactor EPSIN 2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica oleracea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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Location:
chromosome: C4
Exon count:
14
Annotation release Status Assembly Chr Location
100 current BOL (GCF_000695525.1) C4 NC_027751.1 (52225907..52231383)

Chromosome C4 - NC_027751.1Genomic Context describing neighboring genes Neighboring gene extensin-2-like Neighboring gene uncharacterized LOC106341175 Neighboring gene plant UBX domain-containing protein 11 Neighboring gene PTI1-like tyrosine-protein kinase 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_027751.1 Chromosome C4 Reference BOL Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by GO

Function Evidence Code Pubs
enables clathrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of clathrin vesicle coat IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
clathrin interactor EPSIN 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica oleracea Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BOL Primary Assembly

Genomic

  1. NC_027751.1 Reference BOL Primary Assembly

    Range
    52225907..52231383
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013780759.1 → XP_013636213.1  clathrin interactor EPSIN 2-like

    UniProtKB/TrEMBL
    A0A0D3C5Z9
    Conserved Domains (3) summary
    cd03571
    Location:26 → 146
    ENTH_epsin; ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated ...
    pfam08648
    Location:184 → 273
    DUF1777; Protein of unknown function (DUF1777)
    pfam12871
    Location:180 → 275
    PRP38_assoc; Pre-mRNA-splicing factor 38-associated hydrophilic C-term
Nucleotide Protein
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