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NOP53-AS1 NOP53 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 106144593, updated on 27-Aug-2024

Summary

Official Symbol
NOP53-AS1provided by HGNC
Official Full Name
NOP53 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:51587
See related
Ensembl:ENSG00000269656 AllianceGenome:HGNC:51587
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
GLTSCR2-AS1
Expression
Ubiquitous expression in skin (RPKM 3.3), lymph node (RPKM 2.7) and 25 other tissues See more
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Genomic context

Location:
19q13.33
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (47757036..47768840, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (50587846..50599658, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (48260293..48272097, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene EH domain containing 2 Neighboring gene uncharacterized LOC124904733 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:48238171-48238671 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10868 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14870 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:48249496-48249996 Neighboring gene NOP53 ribosome biogenesis factor Neighboring gene small nucleolar RNA, C/D box 23 Neighboring gene Sharpr-MPRA regulatory region 15394 Neighboring gene ReSE screen-validated silencer GRCh37_chr19:48270445-48270705 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10869 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10870 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:48284325-48284910 Neighboring gene selenoprotein W Neighboring gene ribosomal protein L23a pseudogene 80

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_132382.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008745, DB337897
    Related
    ENST00000602048.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    47757036..47768840 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    50587846..50599658 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)