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LINC00407 long intergenic non-protein coding RNA 407 [ Homo sapiens (human) ]

Gene ID: 106144541, updated on 10-Oct-2023

Summary

Official Symbol
LINC00407provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 407provided by HGNC
Primary source
HGNC:HGNC:42739
See related
AllianceGenome:HGNC:42739
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

See LINC00407 in Genome Data Viewer
Location:
13q14.12
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (44640369..44701016)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (43860148..43920745)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (45214505..45275152)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 pseudogene 5 Neighboring gene small nucleolar RNA U13 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:45222966-45223632 Neighboring gene NANOG hESC enhancer GRCh37_chr13:45238394-45238962 Neighboring gene uncharacterized LOC105370185 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:45278756-45279540 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:45288083-45288608 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:45288609-45289134 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:45373665-45374164 Neighboring gene long intergenic non-protein coding RNA 330 Neighboring gene uncharacterized LOC105370187

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_149082.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL356107, AL356515

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    44640369..44701016
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    43860148..43920745
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)