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Rnpc3 RNA binding region (RNP1, RRM) containing 3 [ Dipodomys ordii (Ord's kangaroo rat) ]

Gene ID: 105997108, updated on 13-Mar-2024

Summary

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Gene symbol
Rnpc3
Gene description
RNA binding region (RNP1, RRM) containing 3
See related
Ensembl:ENSDORG00000027343
Gene type
protein coding
RefSeq status
MODEL
Organism
Dipodomys ordii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Heteromyidae; Dipodomyinae; Dipodomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
100 current Dord_2.0 (GCF_000151885.1) Unplaced Scaffold NW_012267355.1 (1358590..1398300, complement)

NW_012267355.1Genomic Context describing neighboring genes Neighboring gene alpha-amylase 2B Neighboring gene pancreatic alpha-amylase Neighboring gene collagen type XI alpha 1 chain Neighboring gene olfactomedin 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012267355.1 Unplaced Scaffold Reference Dord_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables U12 snRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pre-mRNA intronic binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U12-type spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding protein 40

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Dipodomys ordii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Dord_2.0

Genomic

  1. NW_012267355.1 Reference Dord_2.0

    Range
    1358590..1398300 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013031411.1 → XP_012886865.1  RNA-binding protein 40

    See identical proteins and their annotated locations for XP_012886865.1

    UniProtKB/TrEMBL
    A0A1S3GF38
    Conserved Domains (3) summary
    COG0724
    Location:317 → 509
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12238
    Location:28 → 100
    RRM1_RBM40_like; RNA recognition motif 1 in RNA-binding protein 40 (RBM40) and similar proteins
    cd12239
    Location:417 → 499
    RRM2_RBM40_like; RNA recognition motif 2 in RNA-binding protein 40 (RBM40) and similar proteins

  2. XM_013031410.1 → XP_012886864.1  RNA-binding protein 40

    See identical proteins and their annotated locations for XP_012886864.1

    UniProtKB/TrEMBL
    A0A1S3GF38
    Conserved Domains (3) summary
    COG0724
    Location:317 → 509
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12238
    Location:28 → 100
    RRM1_RBM40_like; RNA recognition motif 1 in RNA-binding protein 40 (RBM40) and similar proteins
    cd12239
    Location:417 → 499
    RRM2_RBM40_like; RNA recognition motif 2 in RNA-binding protein 40 (RBM40) and similar proteins

  3. XM_013031413.1 → XP_012886867.1  RNA-binding protein 40

    See identical proteins and their annotated locations for XP_012886867.1

    UniProtKB/TrEMBL
    A0A1S3GF38
    Conserved Domains (3) summary
    COG0724
    Location:317 → 509
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12238
    Location:28 → 100
    RRM1_RBM40_like; RNA recognition motif 1 in RNA-binding protein 40 (RBM40) and similar proteins
    cd12239
    Location:417 → 499
    RRM2_RBM40_like; RNA recognition motif 2 in RNA-binding protein 40 (RBM40) and similar proteins

  4. XM_013031412.1 → XP_012886866.1  RNA-binding protein 40

    See identical proteins and their annotated locations for XP_012886866.1

    UniProtKB/TrEMBL
    A0A1S3GF38
    Related
    ENSDORP00000023247.1, ENSDORT00000035857.1
    Conserved Domains (3) summary
    COG0724
    Location:317 → 509
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12238
    Location:28 → 100
    RRM1_RBM40_like; RNA recognition motif 1 in RNA-binding protein 40 (RBM40) and similar proteins
    cd12239
    Location:417 → 499
    RRM2_RBM40_like; RNA recognition motif 2 in RNA-binding protein 40 (RBM40) and similar proteins

RNA

  1. XR_001175634.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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