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mindy1 MINDY lysine 48 deubiquitinase 1 [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105937792, updated on 13-Mar-2024

Summary

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Gene symbol
mindy1
Gene description
MINDY lysine 48 deubiquitinase 1
See related
Ensembl:ENSFHEG00000016206
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
Also known as
fam63a
Orthologs
human zebrafish all
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Genomic context

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See mindy1 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
13
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 13 NC_046373.1 (23441139..23455190, complement)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012234493.1 (949286..964809, complement)

Chromosome 13 - NC_046373.1Genomic Context describing neighboring genes Neighboring gene regulatory factor X, 5 Neighboring gene phosphatidylinositol 4-kinase beta Neighboring gene saxitoxin and tetrodotoxin-binding protein 1 Neighboring gene uncharacterized LOC105937794

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables K48-linked deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type carboxypeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein K48-linked deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell periphery IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin carboxyl-terminal hydrolase MINDY-1
Names
Protein FAM63A
family with sequence similarity 63 member A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046373.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    23441139..23455190 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012879295.3 → XP_012734749.2  ubiquitin carboxyl-terminal hydrolase MINDY-1

    UniProtKB/TrEMBL
    A0A3Q2PP02
    Conserved Domains (1) summary
    pfam04424
    Location:254 → 371
    MINDY_DUB; MINDY deubiquitinase

  2. XM_021324855.2 → XP_021180530.2  ubiquitin carboxyl-terminal hydrolase MINDY-1

    UniProtKB/TrEMBL
    A0A3Q2PP02
    Conserved Domains (1) summary
    pfam04424
    Location:254 → 371
    MINDY_DUB; MINDY deubiquitinase
Nucleotide Protein
Heading Accession and Version

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