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LOC105836328 serine/arginine-rich splicing factor 7 [ Monomorium pharaonis (pharaoh ant) ]

Gene ID: 105836328, updated on 14-Dec-2023

Summary

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Gene symbol
LOC105836328
Gene description
serine/arginine-rich splicing factor 7
See related
EnsemblRapid:LOC105836328
Gene type
protein coding
RefSeq status
MODEL
Organism
Monomorium pharaonis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Myrmicinae; Monomorium
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Genomic context

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Location:
chromosome: 7
Exon count:
5
Annotation release Status Assembly Chr Location
102 current ASM1337386v2 (GCF_013373865.1) 7 NC_050473.1 (3912159..3915569)
101 previous assembly ASM326058v2 (GCF_003260585.2) Unplaced Scaffold NW_021019267.1 (1321..4731)

Chromosome 7 - NC_050473.1Genomic Context describing neighboring genes Neighboring gene nuclear transcription factor Y subunit gamma Neighboring gene intraflagellar transport protein 52 homolog Neighboring gene ankyrin-1 Neighboring gene fibroblast growth factor receptor substrate 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genes associated with ant social behavior show distinct transcriptional and evolutionary patterns. Mikheyev AS, et al. Elife, 2015 Jan 26. PMID 25621766, Free PMC Article
  2. Comparative transcriptomics reveals the conserved building blocks involved in parallel evolution of diverse phenotypic traits in ants. Morandin C, et al. Genome Biol, 2016 Mar 7. PMID 26951146, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear speck IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine/arginine-rich splicing factor 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Monomorium pharaonis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1337386v2

Genomic

  1. NC_050473.1 Reference ASM1337386v2

    Range
    3912159..3915569
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012680275.3 → XP_012535729.1  serine/arginine-rich splicing factor 7 isoform X2

    Related
    XP_012535729.1, XM_012680275.3
    Conserved Domains (3) summary
    COG0724
    Location:2 → 87
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12373
    Location:13 → 85
    RRM_SRSF3_like; RNA recognition motif in serine/arginine-rich splicing factor 3 (SRSF3) and similar proteins
    pfam00098
    Location:106 → 121
    zf-CCHC; Zinc knuckle

  2. XM_012680274.3 → XP_012535728.1  serine/arginine-rich splicing factor 7 isoform X1

    Related
    XP_012535728.1, XM_012680274.3
    Conserved Domains (3) summary
    COG0724
    Location:2 → 87
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12373
    Location:13 → 85
    RRM_SRSF3_like; RNA recognition motif in serine/arginine-rich splicing factor 3 (SRSF3) and similar proteins
    pfam00098
    Location:106 → 121
    zf-CCHC; Zinc knuckle
Nucleotide Protein
Heading Accession and Version

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Other Literature Sources
Molecular Biology Databases