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LOC105778651 gibberellin 2-beta-dioxygenase [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105778651, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105778651
Gene description
gibberellin 2-beta-dioxygenase
Locus tag
B456_011G043800
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC105778651 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
3
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 10 NC_068574.1 (3258868..3260812)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 11 NC_026939.1 (3277059..3278992)

Chromosome 10 - NC_068574.1Genomic Context describing neighboring genes Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 Neighboring gene probable hexosyltransferase MUCI70 Neighboring gene transfer RNA asparagine (anticodon GUU) Neighboring gene uncharacterized LOC105776497 Neighboring gene transcription factor MYB64

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables C-19 gibberellin 2-beta-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in gibberellin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to light stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gibberellin 2-beta-dioxygenase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068574.1 Reference ASM2569854v1 Primary Assembly

    Range
    3258868..3260812
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012602393.2 → XP_012457847.1  gibberellin 2-beta-dioxygenase isoform X1

    See identical proteins and their annotated locations for XP_012457847.1

    UniProtKB/TrEMBL
    A0A0D2VI05
    Conserved Domains (3) summary
    PLN02156
    Location:1 → 333
    PLN02156; gibberellin 2-beta-dioxygenase
    pfam03171
    Location:179 → 284
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily
    pfam14226
    Location:29 → 117
    DIOX_N; non-haem dioxygenase in morphine synthesis N-terminal

  2. XM_012602394.2 → XP_012457848.1  gibberellin 2-beta-dioxygenase isoform X2

    See identical proteins and their annotated locations for XP_012457848.1

    UniProtKB/TrEMBL
    A0A0D2UM55
    Conserved Domains (3) summary
    PLN02156
    Location:1 → 332
    PLN02156; gibberellin 2-beta-dioxygenase
    pfam03171
    Location:178 → 283
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily
    pfam14226
    Location:29 → 117
    DIOX_N; non-haem dioxygenase in morphine synthesis N-terminal
Nucleotide Protein
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