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LOC105776651 chalcone synthase 1 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105776651, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105776651
Gene description
chalcone synthase 1
Locus tag
B456_011G161300
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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Location:
chromosome: 10
Exon count:
2
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 10 NC_068574.1 (30115682..30118322, complement)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 11 NC_026939.1 (29948306..29950989, complement)

Chromosome 10 - NC_068574.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC128033941 Neighboring gene small nucleolar RNA R71 Neighboring gene uncharacterized LOC128033799 Neighboring gene dihydroxy-acid dehydratase, chloroplastic-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Paterson AH, et al. Nature, 2012 Dec 20. PMID 23257886

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acyltransferase activity, transferring groups other than amino-acyl groups IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in polyketide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chalcone synthase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068574.1 Reference ASM2569854v1 Primary Assembly

    Range
    30115682..30118322 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012599445.2 → XP_012454899.1  chalcone synthase 1

    See identical proteins and their annotated locations for XP_012454899.1

    UniProtKB/TrEMBL
    A0A0D2UU03, A0A7J8P7H2
    Conserved Domains (2) summary
    PLN03173
    Location:1 → 388
    PLN03173; chalcone synthase; Provisional
    cd00831
    Location:16 → 384
    CHS_like; Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs. PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, ...
Nucleotide Protein
Heading Accession and Version

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