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LOC105769526 transcription factor DIVARICATA [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105769526, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105769526
Gene description
transcription factor DIVARICATA
Locus tag
B456_009G093700
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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Location:
chromosome: 5
Exon count:
2
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 5 NC_068569.1 (6880315..6882545, complement)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 9 NC_026937.1 (6832794..6835421, complement)

Chromosome 5 - NC_068569.1Genomic Context describing neighboring genes Neighboring gene sugar transport protein 8 Neighboring gene uncharacterized LOC105769525 Neighboring gene laccase-4 Neighboring gene protein NRT1/ PTR FAMILY 8.1 Neighboring gene uncharacterized LOC128041349

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor DIVARICATA

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068569.1 Reference ASM2569854v1 Primary Assembly

    Range
    6880315..6882545 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012590213.2 → XP_012445667.1  transcription factor DIVARICATA

    See identical proteins and their annotated locations for XP_012445667.1

    UniProtKB/TrEMBL
    A0A0D2TGI1, A0A7J8Q005
    Conserved Domains (2) summary
    TIGR01557
    Location:131 → 183
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    cd00167
    Location:28 → 74
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
Nucleotide Protein
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