U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC02144 long intergenic non-protein coding RNA 2144 [ Homo sapiens (human) ]

Gene ID: 105379069, updated on 17-Jun-2024

Summary

Official Symbol
LINC02144provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2144provided by HGNC
Primary source
HGNC:HGNC:53004
See related
AllianceGenome:HGNC:53004
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See LINC02144 in Genome Data Viewer
Location:
5q14.3
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (87657968..87733076, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (88139146..88214250, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105379066 Neighboring gene RNA, U6 small nuclear 727, pseudogene Neighboring gene uncharacterized LOC124901222 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:86872157-86872704 Neighboring gene long intergenic non-protein coding RNA 2488 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr5:87017762-87018262 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr5:87018263-87018763 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:87050992-87051631 Neighboring gene VISTA enhancer hs853 Neighboring gene uncharacterized LOC124901023 Neighboring gene VISTA enhancer hs266 Neighboring gene VISTA enhancer hs267 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:87253511-87254010 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:87310460-87310960 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:87310961-87311461 Neighboring gene NANOG hESC enhancer GRCh37_chr5:87345495-87346036 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:87347843-87348384 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:87348385-87348925 Neighboring gene uncharacterized LOC105379070

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183312.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008939, AC091877

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    87657968..87733076 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    88139146..88214250 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)