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CLCA4-AS1 CLCA4 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 105378828, updated on 23-Nov-2021

Summary

Official Symbol
CLCA4-AS1provided by HGNC
Official Full Name
CLCA4 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:54055
See related
Ensembl:ENSG00000261737
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in colon (RPKM 17.6), esophagus (RPKM 12.6) and 5 other tissues See more
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Genomic context

See CLCA4-AS1 in Genome Data Viewer
Location:
1p22.3
Exon count:
5
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (86571181..86704493, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (87036864..87170176, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378826 Neighboring gene cell division cycle associated 4 pseudogene 2 Neighboring gene chloride channel accessory 4 Neighboring gene chloride channel accessory 3, pseudogene Neighboring gene SH3 domain containing GRB2 like, endophilin B1 Neighboring gene ribosomal protein L17 pseudogene 5

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_135837.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL049597, AL122002
  2. NR_135838.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA804585, AA878915, BC034638, HY051678
    Related
    ENST00000565575.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    86571181..86704493 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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