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LINC02172 long intergenic non-protein coding RNA 2172 [ Homo sapiens (human) ]

Gene ID: 105377443, updated on 10-Oct-2023

Summary

Official Symbol
LINC02172provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2172provided by HGNC
Primary source
HGNC:HGNC:53034
See related
Ensembl:ENSG00000251632 AllianceGenome:HGNC:53034
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC02172 in Genome Data Viewer
Location:
4q28.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (137545731..137603430)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (140869135..140926838)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (138466885..138524584)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377442 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:138417700-138418253 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21908 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:138458683-138459528 Neighboring gene protocadherin 18 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:138464138-138465055 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21909 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:138494055-138494554 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:138553021-138553521 Neighboring gene uncharacterized LOC101927414 Neighboring gene uncharacterized LOC107986314 Neighboring gene uncharacterized LOC105377444 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:138631775-138632406 Neighboring gene OCT4-H3K27ac hESC enhancer GRCh37_chr4:138632407-138633036

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146553.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC116563, DA299236, U79300
    Related
    ENST00000507365.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    137545731..137603430
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    140869135..140926838
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)